Online hippocampi extraction tool (FIFO Queue)


The "HIPPOSEG extraction tool" is a fully automated software-as-service tool optimized for epilepsy. HIPPOSEG uses STEPS, a multi-atlas label propagation and fusion strategy implemented as part of NiftySeg.

The results will be sent to the following e-mail address:


Select files (Maximum of 5 files with 100 Mb each in .nii or nii.gz formats):
[Select files - Select T1 files]
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 By filling in this form I agree to have the provided email address stored in order to use it as email address to send the requested results. I allow use of this email address for contacting me about the project. I understand that NiftyWeb will not disclose this information to any other parties.

Upload files and run the ROI extraction



The queue is empty and HIPPOSEG is ready to process your files!
Total files processed so far: 211/211

Publications on HIPPOSEG

We would appreciate it if the following references would be included in any published work that uses this resource:

  • G. P. Winston, M. J. Cardoso, E. J. Williams, J. L. Burdett, P. A. Bartlett, M. Espak, C. Behr, J. S. Duncan and S. Ourselin. Automated hippocampal segmentation in patients with epilepsy: Available free online. Epilepsia 54(12), 2166-2173 (2013).
  • http://niftyweb.cs.ucl.ac.uk/
  • Ferran Prados, M. Jorge Cardoso, Ninon Burgos, Claudia AM Wheeler-Kingshott, Sebastien Ourselin. NiftyWeb: web based platform for image processing on the cloud. International Society for Magnetic Resonance in Medicine (ISMRM) 24th Scientific Meeting and Exhibition - Singapore 2016

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