Hippocampal profiling tool (FIFO Queue)


The hippocampal profiling tool is a fully automated software-as-service tool optimised for epilepsy. It uses HippoSeg to obtain accurate hippocampal segmentations which are then aligned with a group template to use for cross-sectional area profiling along the anterior-posterior axis. These whole-hippocampal volumes and cross-sectional area profiles are compared to a healthy control population of over 300 healthy controls to assist in localised atrophy characterisation.

The results will be sent to the following e-mail address:


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 By filling in this form I agree to have the provided email address stored in order to use it as email address to send the requested results. I allow use of this email address for contacting me about the project. I understand that NiftyWeb will not disclose this information to any other parties.

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Publications on HIPPOPROF

We would appreciate it if the following references would be included in any published work that uses this resource:

  • S.B. Vos, G.P. Winston, O. Goodkin, H.G. Pemberton, F. Barkhof, F. Prados, M. Galovic, M. Koepp, S. Ourselin, M.J. Cardoso, J.S. Duncan. "Hippocampal profiling: localised MRI volumetry and T2 relaxometry for hippocampal sclerosis". Epilepsia, 2019, in press
  • G. P. Winston, M. J. Cardoso, E. J. Williams, J. L. Burdett, P. A. Bartlett, M. Espak, C. Behr, J. S. Duncan and S. Ourselin. Automated hippocampal segmentation in patients with epilepsy: Available free online. Epilepsia 54(12), 2166-2173 (2013).
  • http://niftyweb.cs.ucl.ac.uk/
  • Ferran Prados, M. Jorge Cardoso, Ninon Burgos, Claudia AM Wheeler-Kingshott, Sebastien Ourselin. NiftyWeb: web based platform for image processing on the cloud. International Society for Magnetic Resonance in Medicine (ISMRM) 24th Scientific Meeting and Exhibition - Singapore 2016

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